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MPEx Crack Free Download is a small application that can be used to view large membrane protein sequences (up to 700+ amino acid (aa) long) as a hydropathy plot.
MPEx is easy to use and very flexible:
• You can select the window size, window type (one or two sequence windows), and window frame position according to your specific interests.
• A 100% hydropathy plot representation can be produced by simple commands.
• You can save your plot as an image file in various sizes.
• You can save your hydropathy plot as an ASCII file or a Text file.
• You can save your hydropathy plot into a PNG, GIF, JPG, BMP, and TIFF file format.
• You can save any portion of your hydropathy plot as a BMP, JPG, TIFF, or PNG image file.
(See the Examples)
• You can resize the hydropathy plot on the screen by clicking the free mouse buttons.
• You can zoom in and out of the hydropathy plot by double clicking on the plot window.
• You can toggle on and off the Hydrophobicity plot (H plot).
• You can toggle on and off the polar plot (P plot).
• You can toggle on and off the amino acid conservation plot (C plot).
• You can toggle on and off the transmembrane plot (T plot).
• You can toggle on and off the threshold plot (T+ plot).
• You can toggle on and off the turning plot (Turn plot).
• You can toggle on and off the sequence of turning plot (T- plot).
• You can toggle on and off the turning plot with two window sequences (T- sequence plot).
• You can toggle on and off the sequence of reversing scale plot (R plot).
• You can toggle on and off the sequence of rainbow plot (Rainbow plot).
• You can toggle on and off the sequence of color scheme plot (Color scheme plot).
• You can toggle on and off the sequence of color scales plot (Color scales plot).
• You can toggle on and off the sequence of standard deviation plot (SD plot).
• You can toggle on and off the sequence of regression plot (Regression plot).
• You can toggle on and off the sequence of principal component analysis plot (PCA plot).
• You can toggle on and off the sequence of correlation plot (
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MPEx Crack Download
The software is a component of the Membrane Protein Explorer(MPEx) suite.
MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles.
The program is based on sliding-window analysis that represents an amino acid sequence as a sequence of numbers representing physical or statistical properties of the amino acid sequence.
MPEx Description:
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What’s New in the MPEx?
MPEx is a small, easy to use application designed to help you explore the topology and other features of membrane proteins by means of hydropathy plots based upon thermodynamic and biological principles.
MPEx is capable of displaying large sequence alignments and predicted topologies, as well as displaying the correlation between hydrophobic moment and hydropathy plots for amino acid sequences belonging to membrane proteins of known topology.
Features:
* Display multiple sequences in a window
* Display ctmMPEx files in the program using the recent export option in the File menu
* Display structure data in the program using the recent export option in the File menu
* View 3D models of selected sequences
* Plot amino acid sequences and residue occupancies as HMM states or hidden Markov models
* Generate 2D and 3D hydropathy plots (V-plot, P-plot and ctmMPEx format)
* High resolution display
* Display a protein sequence or sequence alignment in 1D, 2D and 3D representations
* Access a full set of statistics on the amino acid composition of the sequence
* Plot profiles of each structure-based hydropathy scale (V-plot, P-plot) as a function of the position of a window along the sequence
* Compare any two sequences
* Compare profiles from different sources (hydrophobicity scales, profiles from different prediction methods)
* Plot protein sequences as 3D models in the molecular graphic program of your choice.
* Compute many types of statistics on protein sequences
You can also export the following files:
* ctmMPEx files
* Protein sequences in the 2D and 3D representations (see examples in the HELP)
* Profile plots as TEX-plots, HMMer-plots and V-plots (see examples in the HELP)
Windows and platforms:
* Windows: XP, 2000, NT, Vista, 7, 8
* Linux: G.Desktop
* OS/2: Warp 4.0 (yes, OS/2 Warp includes Windows 95 compatibility mode)
* Unix platforms: Debian GNU/Linux
There are also two recent versions of MPEx for Linux: latest 0.6 and 0.5
System requirements:
* Windows: Windows XP or later
* Linux: KDE 3.5 or later
* OS/2: Warp 4.0 (pre-loaded with GUI)
You can download the latest version of MPEx under the
System Requirements For MPEx:
Windows® 7 and Vista®
Mac® OS X® 10.6.8 or higher
Minimum 1 GB RAM
20 GB free hard drive space
800 x 600 display resolution (preferred)
Web Browser:
Internet Explorer 9 or higher
Mozilla Firefox 11 or higher
Safari 5.1.5 or higher
Google Chrome 19 or higher
Adobe Flash® Player 10 or higher
Yahoo! Games Mobile, Yahoo! Games 360
Sending an invite to a friend is simple
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